rtk::ProjectionsDecompositionNegativeLogLikelihood Class Reference

#include <rtkProjectionsDecompositionNegativeLogLikelihood.h>

Inheritance diagram for rtk::ProjectionsDecompositionNegativeLogLikelihood:

Collaboration diagram for rtk::ProjectionsDecompositionNegativeLogLikelihood:

Public Types
using	ConstPointer = itk::SmartPointer< const Self >
using	DerivativeType = Superclass::DerivativeType
using	DetectorResponseType = vnl_matrix< double >
using	IncidentSpectrumType = vnl_matrix< float >
using	MaterialAttenuationsType = vnl_matrix< double >
using	MeanAttenuationInBinType = itk::VariableSizeMatrix< double >
using	MeasuredDataType = itk::VariableLengthVector< double >
using	MeasureType = Superclass::MeasureType
using	ParametersType = Superclass::ParametersType
using	Pointer = itk::SmartPointer< Self >
using	Self = ProjectionsDecompositionNegativeLogLikelihood
using	Superclass = itk::SingleValuedCostFunction
using	ThresholdsType = itk::VariableLengthVector< int >

Public Member Functions
itk::VariableLengthVector< double >	BinwiseLogTransform () const
virtual void	ComputeFischerMatrix (const ParametersType &)
virtual ::itk::LightObject::Pointer	CreateAnother () const
virtual vnl_vector< double >	ForwardModel (const ParametersType &lineIntegrals) const
void	GetAttenuationFactors (const ParametersType &lineIntegrals, vnl_vector< double > &attenuationFactors) const
void	GetDerivative (const ParametersType &, DerivativeType &) const override
virtual DetectorResponseType	GetDetectorResponse ()
virtual itk::VariableLengthVector< float >	GetFischerMatrix ()
virtual IncidentSpectrumType	GetIncidentSpectrum ()
virtual itk::VariableLengthVector< float >	GetInverseCramerRaoLowerBound ()
virtual MaterialAttenuationsType	GetMaterialAttenuations ()
virtual MeasuredDataType	GetMeasuredData ()
virtual const char *	GetNameOfClass () const
virtual unsigned int	GetNumberOfEnergies ()
virtual unsigned int	GetNumberOfMaterials ()
unsigned int	GetNumberOfParameters () const override
virtual unsigned int	GetNumberOfSpectralBins ()
virtual ThresholdsType	GetThresholds ()
MeasureType	GetValue (const ParametersType &) const override
virtual vnl_vector< double >	GetVariances (const ParametersType &) const
itk::VariableLengthVector< double >	GuessInitialization () const
virtual void	Initialize ()
	ProjectionsDecompositionNegativeLogLikelihood ()
virtual void	SetDetectorResponse (DetectorResponseType _arg)
virtual void	SetIncidentSpectrum (IncidentSpectrumType _arg)
virtual void	SetMaterialAttenuations (MaterialAttenuationsType _arg)
virtual void	SetMeasuredData (MeasuredDataType _arg)
virtual void	SetNumberOfEnergies (unsigned int _arg)
virtual void	SetNumberOfMaterials (unsigned int _arg)
virtual void	SetNumberOfSpectralBins (unsigned int _arg)
virtual void	SetThresholds (ThresholdsType _arg)
	~ProjectionsDecompositionNegativeLogLikelihood () override=default

Static Public Member Functions
static Pointer	New ()

Protected Attributes
DetectorResponseType	m_DetectorResponse
itk::VariableSizeMatrix< float >	m_Fischer
IncidentSpectrumType	m_IncidentSpectrum
vnl_matrix< double >	m_IncidentSpectrumAndDetectorResponseProduct
bool	m_Initialized
MaterialAttenuationsType	m_MaterialAttenuations
MeasuredDataType	m_MeasuredData
unsigned int	m_NumberOfEnergies
unsigned int	m_NumberOfMaterials
unsigned int	m_NumberOfSpectralBins
ThresholdsType	m_Thresholds

Detailed Description

Definition at line 39 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Member Typedef Documentation

ConstPointer

using rtk::ProjectionsDecompositionNegativeLogLikelihood::ConstPointer = itk::SmartPointer<const Self>

Definition at line 47 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

DerivativeType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::DerivativeType = Superclass::DerivativeType

Definition at line 58 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

DetectorResponseType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::DetectorResponseType = vnl_matrix<double>

Definition at line 61 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

IncidentSpectrumType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::IncidentSpectrumType = vnl_matrix<float>

Definition at line 63 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

MaterialAttenuationsType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::MaterialAttenuationsType = vnl_matrix<double>

Definition at line 62 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

MeanAttenuationInBinType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::MeanAttenuationInBinType = itk::VariableSizeMatrix<double>

Definition at line 66 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

MeasuredDataType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::MeasuredDataType = itk::VariableLengthVector<double>

Definition at line 64 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

MeasureType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::MeasureType = Superclass::MeasureType

Definition at line 59 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

ParametersType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::ParametersType = Superclass::ParametersType

Definition at line 57 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Pointer

using rtk::ProjectionsDecompositionNegativeLogLikelihood::Pointer = itk::SmartPointer<Self>

Definition at line 46 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Self

using rtk::ProjectionsDecompositionNegativeLogLikelihood::Self = ProjectionsDecompositionNegativeLogLikelihood

Definition at line 44 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Superclass

using rtk::ProjectionsDecompositionNegativeLogLikelihood::Superclass = itk::SingleValuedCostFunction

Definition at line 45 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

ThresholdsType

using rtk::ProjectionsDecompositionNegativeLogLikelihood::ThresholdsType = itk::VariableLengthVector<int>

Definition at line 65 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Constructor & Destructor Documentation

ProjectionsDecompositionNegativeLogLikelihood()

rtk::ProjectionsDecompositionNegativeLogLikelihood::ProjectionsDecompositionNegativeLogLikelihood ( )

inline

Definition at line 69 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References m_Initialized, m_NumberOfEnergies, and m_NumberOfMaterials.

~ProjectionsDecompositionNegativeLogLikelihood()

rtk::ProjectionsDecompositionNegativeLogLikelihood::~ProjectionsDecompositionNegativeLogLikelihood ( )

overridedefault

Member Function Documentation

BinwiseLogTransform()

itk::VariableLengthVector<double> rtk::ProjectionsDecompositionNegativeLogLikelihood::BinwiseLogTransform ( ) const

inline

Definition at line 212 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References m_IncidentSpectrumAndDetectorResponseProduct, m_MeasuredData, m_NumberOfEnergies, and m_NumberOfSpectralBins.

Referenced by GuessInitialization().

ComputeFischerMatrix()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::ComputeFischerMatrix ( const ParametersType &  )

inlinevirtual

Reimplemented in rtk::Schlomka2008NegativeLogLikelihood.

Definition at line 124 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

CreateAnother()

virtual::itk::LightObject::Pointer rtk::ProjectionsDecompositionNegativeLogLikelihood::CreateAnother ( ) const

virtual

Reimplemented from itk::Object.

Reimplemented in rtk::Schlomka2008NegativeLogLikelihood.

ForwardModel()

virtual vnl_vector<double> rtk::ProjectionsDecompositionNegativeLogLikelihood::ForwardModel ( const ParametersType &  lineIntegrals ) const

inlinevirtual

Definition at line 134 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References GetAttenuationFactors(), m_IncidentSpectrumAndDetectorResponseProduct, and m_NumberOfEnergies.

Referenced by rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), rtk::Schlomka2008NegativeLogLikelihood::GetDerivative(), rtk::DualEnergyNegativeLogLikelihood::GetValue(), and rtk::Schlomka2008NegativeLogLikelihood::GetValue().

GetAttenuationFactors()

void rtk::ProjectionsDecompositionNegativeLogLikelihood::GetAttenuationFactors ( const ParametersType &  lineIntegrals, vnl_vector< double > &  attenuationFactors  ) const

inline

Definition at line 145 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References m_MaterialAttenuations, m_NumberOfEnergies, and m_NumberOfMaterials.

Referenced by rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), ForwardModel(), rtk::Schlomka2008NegativeLogLikelihood::GetDerivative(), and rtk::DualEnergyNegativeLogLikelihood::GetVariances().

GetDerivative()

void rtk::ProjectionsDecompositionNegativeLogLikelihood::GetDerivative ( const ParametersType &  , DerivativeType &    ) const

inlineoverridevirtual

Implements itk::SingleValuedCostFunction.

Reimplemented in rtk::Schlomka2008NegativeLogLikelihood.

Definition at line 86 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

GetDetectorResponse()

virtual DetectorResponseType rtk::ProjectionsDecompositionNegativeLogLikelihood::GetDetectorResponse ( )

virtual

GetFischerMatrix()

virtual itk::VariableLengthVector<float> rtk::ProjectionsDecompositionNegativeLogLikelihood::GetFischerMatrix ( )

inlinevirtual

Definition at line 110 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References m_Fischer, and m_NumberOfMaterials.

GetIncidentSpectrum()

virtual IncidentSpectrumType rtk::ProjectionsDecompositionNegativeLogLikelihood::GetIncidentSpectrum ( )

virtual

GetInverseCramerRaoLowerBound()

virtual itk::VariableLengthVector<float> rtk::ProjectionsDecompositionNegativeLogLikelihood::GetInverseCramerRaoLowerBound ( )

inlinevirtual

Definition at line 96 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References m_Fischer, and m_NumberOfMaterials.

GetMaterialAttenuations()

virtual MaterialAttenuationsType rtk::ProjectionsDecompositionNegativeLogLikelihood::GetMaterialAttenuations ( )

virtual

GetMeasuredData()

virtual MeasuredDataType rtk::ProjectionsDecompositionNegativeLogLikelihood::GetMeasuredData ( )

virtual

GetNameOfClass()

virtual const char* rtk::ProjectionsDecompositionNegativeLogLikelihood::GetNameOfClass ( ) const

virtual

Reimplemented from itk::SingleValuedCostFunction.

Reimplemented in rtk::Schlomka2008NegativeLogLikelihood, and rtk::DualEnergyNegativeLogLikelihood.

GetNumberOfEnergies()

virtual unsigned int rtk::ProjectionsDecompositionNegativeLogLikelihood::GetNumberOfEnergies ( )

virtual

GetNumberOfMaterials()

virtual unsigned int rtk::ProjectionsDecompositionNegativeLogLikelihood::GetNumberOfMaterials ( )

virtual

GetNumberOfParameters()

unsigned int rtk::ProjectionsDecompositionNegativeLogLikelihood::GetNumberOfParameters ( ) const

inlineoverridevirtual

Implements itk::CostFunctionTemplate< TInternalComputationValueType >.

Definition at line 128 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References m_NumberOfMaterials.

GetNumberOfSpectralBins()

virtual unsigned int rtk::ProjectionsDecompositionNegativeLogLikelihood::GetNumberOfSpectralBins ( )

virtual

GetThresholds()

virtual ThresholdsType rtk::ProjectionsDecompositionNegativeLogLikelihood::GetThresholds ( )

virtual

GetValue()

MeasureType rtk::ProjectionsDecompositionNegativeLogLikelihood::GetValue ( const ParametersType &  ) const

inlineoverridevirtual

Implements itk::SingleValuedCostFunction.

Reimplemented in rtk::Schlomka2008NegativeLogLikelihood.

Definition at line 80 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

GetVariances()

virtual vnl_vector<double> rtk::ProjectionsDecompositionNegativeLogLikelihood::GetVariances ( const ParametersType &  ) const

inlinevirtual

Reimplemented in rtk::DualEnergyNegativeLogLikelihood.

Definition at line 237 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References m_NumberOfSpectralBins.

GuessInitialization()

itk::VariableLengthVector<double> rtk::ProjectionsDecompositionNegativeLogLikelihood::GuessInitialization ( ) const

inline

Definition at line 166 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

References BinwiseLogTransform(), m_IncidentSpectrum, m_MaterialAttenuations, m_NumberOfMaterials, m_NumberOfSpectralBins, and m_Thresholds.

Initialize()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::Initialize ( )

inlinevirtual

Reimplemented in rtk::Schlomka2008NegativeLogLikelihood, and rtk::DualEnergyNegativeLogLikelihood.

Definition at line 92 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

New()

static Pointer rtk::ProjectionsDecompositionNegativeLogLikelihood::New ( )

static

SetDetectorResponse()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::SetDetectorResponse ( DetectorResponseType  _arg )

virtual

SetIncidentSpectrum()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::SetIncidentSpectrum ( IncidentSpectrumType  _arg )

virtual

SetMaterialAttenuations()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::SetMaterialAttenuations ( MaterialAttenuationsType  _arg )

virtual

SetMeasuredData()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::SetMeasuredData ( MeasuredDataType  _arg )

virtual

SetNumberOfEnergies()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::SetNumberOfEnergies ( unsigned int  _arg )

virtual

SetNumberOfMaterials()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::SetNumberOfMaterials ( unsigned int  _arg )

virtual

SetNumberOfSpectralBins()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::SetNumberOfSpectralBins ( unsigned int  _arg )

virtual

SetThresholds()

virtual void rtk::ProjectionsDecompositionNegativeLogLikelihood::SetThresholds ( ThresholdsType  _arg )

virtual

Member Data Documentation

m_DetectorResponse

DetectorResponseType rtk::ProjectionsDecompositionNegativeLogLikelihood::m_DetectorResponse

protected

Definition at line 271 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by rtk::DualEnergyNegativeLogLikelihood::Initialize(), and rtk::Schlomka2008NegativeLogLikelihood::Initialize().

m_Fischer

itk::VariableSizeMatrix<float> rtk::ProjectionsDecompositionNegativeLogLikelihood::m_Fischer

protected

Definition at line 280 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), GetFischerMatrix(), and GetInverseCramerRaoLowerBound().

m_IncidentSpectrum

IncidentSpectrumType rtk::ProjectionsDecompositionNegativeLogLikelihood::m_IncidentSpectrum

protected

Definition at line 274 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by GuessInitialization(), rtk::DualEnergyNegativeLogLikelihood::Initialize(), and rtk::Schlomka2008NegativeLogLikelihood::Initialize().

m_IncidentSpectrumAndDetectorResponseProduct

vnl_matrix<double> rtk::ProjectionsDecompositionNegativeLogLikelihood::m_IncidentSpectrumAndDetectorResponseProduct

protected

Definition at line 275 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by BinwiseLogTransform(), rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), ForwardModel(), rtk::Schlomka2008NegativeLogLikelihood::GetDerivative(), rtk::DualEnergyNegativeLogLikelihood::GetVariances(), rtk::DualEnergyNegativeLogLikelihood::Initialize(), and rtk::Schlomka2008NegativeLogLikelihood::Initialize().

m_Initialized

bool rtk::ProjectionsDecompositionNegativeLogLikelihood::m_Initialized

protected

Definition at line 279 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by ProjectionsDecompositionNegativeLogLikelihood().

m_MaterialAttenuations

MaterialAttenuationsType rtk::ProjectionsDecompositionNegativeLogLikelihood::m_MaterialAttenuations

protected

Definition at line 267 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), GetAttenuationFactors(), rtk::Schlomka2008NegativeLogLikelihood::GetDerivative(), and GuessInitialization().

m_MeasuredData

MeasuredDataType rtk::ProjectionsDecompositionNegativeLogLikelihood::m_MeasuredData

protected

Definition at line 272 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by BinwiseLogTransform(), rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), rtk::Schlomka2008NegativeLogLikelihood::GetDerivative(), rtk::DualEnergyNegativeLogLikelihood::GetValue(), and rtk::Schlomka2008NegativeLogLikelihood::GetValue().

m_NumberOfEnergies

unsigned int rtk::ProjectionsDecompositionNegativeLogLikelihood::m_NumberOfEnergies

protected

Definition at line 276 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by BinwiseLogTransform(), rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), ForwardModel(), GetAttenuationFactors(), rtk::Schlomka2008NegativeLogLikelihood::GetDerivative(), rtk::DualEnergyNegativeLogLikelihood::GetVariances(), rtk::DualEnergyNegativeLogLikelihood::Initialize(), and ProjectionsDecompositionNegativeLogLikelihood().

m_NumberOfMaterials

unsigned int rtk::ProjectionsDecompositionNegativeLogLikelihood::m_NumberOfMaterials

protected

Definition at line 277 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), GetAttenuationFactors(), rtk::Schlomka2008NegativeLogLikelihood::GetDerivative(), GetFischerMatrix(), GetInverseCramerRaoLowerBound(), GetNumberOfParameters(), rtk::DualEnergyNegativeLogLikelihood::GetValue(), GuessInitialization(), and ProjectionsDecompositionNegativeLogLikelihood().

m_NumberOfSpectralBins

unsigned int rtk::ProjectionsDecompositionNegativeLogLikelihood::m_NumberOfSpectralBins

protected

Definition at line 278 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by BinwiseLogTransform(), rtk::Schlomka2008NegativeLogLikelihood::ComputeFischerMatrix(), rtk::DualEnergyNegativeLogLikelihood::DualEnergyNegativeLogLikelihood(), rtk::Schlomka2008NegativeLogLikelihood::GetDerivative(), rtk::Schlomka2008NegativeLogLikelihood::GetValue(), GetVariances(), GuessInitialization(), and rtk::Schlomka2008NegativeLogLikelihood::Schlomka2008NegativeLogLikelihood().

m_Thresholds

ThresholdsType rtk::ProjectionsDecompositionNegativeLogLikelihood::m_Thresholds

protected

Definition at line 273 of file rtkProjectionsDecompositionNegativeLogLikelihood.h.

Referenced by GuessInitialization(), and rtk::DualEnergyNegativeLogLikelihood::Initialize().

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The documentation for this class was generated from the following file:

• rtkProjectionsDecompositionNegativeLogLikelihood.h