rtk::ProjectionsReader< TOutputImage > Class Template Reference

#include <rtkProjectionsReader.h>

Inheritance diagram for rtk::ProjectionsReader< TOutputImage >:

Collaboration diagram for rtk::ProjectionsReader< TOutputImage >:

Public Types
using	FileNamesContainer = std::vector< std::string >
using	MedianRadiusType = typename rtk::ConditionalMedianImageFilter< TOutputImage >::MedianRadiusType
using	OutputImageDirectionType = typename OutputImageType::DirectionType
using	OutputImagePixelType = typename OutputImageType::PixelType
using	OutputImagePointer = typename OutputImageType::Pointer
using	OutputImagePointType = typename OutputImageType::PointType
using	OutputImageRegionType = typename OutputImageType::RegionType
using	OutputImageSizeType = typename OutputImageType::SizeType
using	OutputImageSpacingType = typename OutputImageType::SpacingType
using	OutputImageType = TOutputImage
using	Pointer = itk::SmartPointer< Self >
using	Self = ProjectionsReader
using	ShrinkFactorsType = itk::FixedArray< unsigned int, TOutputImage::ImageDimension >
using	StreamingType = itk::StreamingImageFilter< TOutputImage, TOutputImage >
using	Superclass = itk::ImageSource< TOutputImage >
using	WaterPrecorrectionType = rtk::WaterPrecorrectionImageFilter< TOutputImage, TOutputImage >
using	WaterPrecorrectionVectorType = std::vector< double >

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
void	GenerateOutputInformation () override
virtual OutputImageDirectionType	GetDirection () const
virtual double	GetNonNegativityConstraintThreshold ()
virtual double	GetScatterToPrimaryRatio ()
virtual OutputImageSpacingType	GetSpacing () const
virtual void	SetDirection (OutputImageDirectionType _arg)
virtual void	SetNonNegativityConstraintThreshold (double _arg)
virtual void	SetScatterToPrimaryRatio (double _arg)
virtual void	SetSpacing (OutputImageSpacingType _arg)
virtual const char *	GetNameOfClass () const
void	SetFileNames (const FileNamesContainer &name)
const FileNamesContainer &	GetFileNames () const
virtual void	SetOrigin (OutputImagePointType _arg)
virtual OutputImagePointType	GetOrigin () const
virtual void	SetUpperBoundaryCropSize (OutputImageSizeType _arg)
virtual OutputImageSizeType	GetUpperBoundaryCropSize () const
virtual void	SetLowerBoundaryCropSize (OutputImageSizeType _arg)
virtual OutputImageSizeType	GetLowerBoundaryCropSize () const
virtual void	SetShrinkFactors (ShrinkFactorsType _arg)
virtual const ShrinkFactorsType &	GetShrinkFactors () const
virtual void	SetMedianRadius (MedianRadiusType _arg)
virtual const MedianRadiusType &	GetMedianRadius () const
virtual double	GetConditionalMedianThresholdMultiplier ()
virtual void	SetConditionalMedianThresholdMultiplier (double _arg)
virtual double	GetAirThreshold ()
virtual void	SetAirThreshold (double _arg)
virtual double	GetI0 ()
virtual void	SetI0 (double _arg)
virtual double	GetIDark ()
virtual void	SetIDark (double _arg)
virtual WaterPrecorrectionVectorType	GetWaterPrecorrectionCoefficients ()
virtual void	SetWaterPrecorrectionCoefficients (const WaterPrecorrectionVectorType _arg)
virtual void	SetComputeLineIntegral (bool _arg)
virtual bool	GetComputeLineIntegral () const
virtual void	ComputeLineIntegralOn ()
virtual void	ComputeLineIntegralOff ()
virtual unsigned int	GetVectorComponent ()
virtual void	SetVectorComponent (unsigned int _arg)
virtual void	SetImageIO (itk::ImageIOBase *_arg)
virtual const itk::ImageIOBase *	GetImageIO () const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes
static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Member Functions
void	GenerateData () override
void	PrintSelf (std::ostream &os, itk::Indent indent) const override
	ProjectionsReader ()
	~ProjectionsReader () override=default

Protected Attributes
FileNamesContainer	m_FileNames

Private Member Functions
template<class TInputImage >
void	PropagateParametersToMiniPipeline ()
void	ConnectElektaRawFilter (itk::ImageBase< OutputImageDimension > **nextInputBase)
void	PropagateI0 (itk::ImageBase< OutputImageDimension > **nextInputBase)

Private Attributes
itk::ProcessObject::Pointer	m_BinningFilter
itk::ProcessObject::Pointer	m_ChangeInformationFilter
itk::ProcessObject::Pointer	m_ConditionalMedianFilter
itk::ProcessObject::Pointer	m_CropFilter
itk::ProcessObject::Pointer	m_ElektaRawFilter
itk::ProcessObject::Pointer	m_I0EstimationFilter
itk::ImageIOBase::Pointer	m_ImageIO { nullptr }
itk::ImageSource< TOutputImage >::Pointer	m_RawCastFilter
itk::ProcessObject::Pointer	m_RawDataReader
itk::ImageSource< TOutputImage >::Pointer	m_RawToAttenuationFilter
itk::ProcessObject::Pointer	m_ScatterFilter
StreamingType::Pointer	m_StreamingFilter
itk::ProcessObject::Pointer	m_VectorComponentSelectionFilter
WaterPrecorrectionType::Pointer	m_WaterPrecorrectionFilter
OutputImagePointType	m_Origin
OutputImageSpacingType	m_Spacing
OutputImageDirectionType	m_Direction
OutputImageSizeType	m_LowerBoundaryCropSize
OutputImageSizeType	m_UpperBoundaryCropSize
ShrinkFactorsType	m_ShrinkFactors
MedianRadiusType	m_MedianRadius
double	m_AirThreshold { 32000 }
double	m_ScatterToPrimaryRatio { 0. }
double	m_NonNegativityConstraintThreshold { itk::NumericTraits<double>::NonpositiveMin() }
double	m_I0 { itk::NumericTraits<double>::NonpositiveMin() }
double	m_IDark { 0. }
double	m_ConditionalMedianThresholdMultiplier { 1. }
WaterPrecorrectionVectorType	m_WaterPrecorrectionCoefficients
bool	m_ComputeLineIntegral { true }
unsigned int	m_VectorComponent { 0 }

Detailed Description

template<class TOutputImage>
class rtk::ProjectionsReader< TOutputImage >

This is the universal projections reader of rtk (raw data converted to attenuation). Currently handles his (Elekta Synergy), hnd (Varian OBI), edf (ESRF), XRad. For all other ITK file formats (mha, tif, ...), it is assumed that the attenuation is directly passed if the pixel type is not unsigned short and there is no processing. Optionnally, one can activate cropping, binning, scatter correction, etc. The details of the mini- pipeline is provided below, note that dashed filters are shunt if they are not required according to parameters.

Test:

rtkedftest.cxx, rtkelektatest.cxx, rtkimagxtest.cxx, rtkdigisenstest.cxx, rtkxradtest.cxx, rtkvariantest.cxx

Author

Simon Rit

Definition at line 125 of file rtkProjectionsReader.h.

Member Typedef Documentation

FileNamesContainer

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::FileNamesContainer = std::vector<std::string>

Definition at line 156 of file rtkProjectionsReader.h.

MedianRadiusType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::MedianRadiusType = typename rtk::ConditionalMedianImageFilter<TOutputImage>::MedianRadiusType

Definition at line 158 of file rtkProjectionsReader.h.

OutputImageDirectionType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::OutputImageDirectionType = typename OutputImageType::DirectionType

Definition at line 151 of file rtkProjectionsReader.h.

OutputImagePixelType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::OutputImagePixelType = typename OutputImageType::PixelType

Definition at line 150 of file rtkProjectionsReader.h.

OutputImagePointer

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::OutputImagePointer = typename OutputImageType::Pointer

Definition at line 148 of file rtkProjectionsReader.h.

OutputImagePointType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::OutputImagePointType = typename OutputImageType::PointType

Definition at line 153 of file rtkProjectionsReader.h.

OutputImageRegionType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::OutputImageRegionType = typename OutputImageType::RegionType

Definition at line 149 of file rtkProjectionsReader.h.

OutputImageSizeType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::OutputImageSizeType = typename OutputImageType::SizeType

Definition at line 154 of file rtkProjectionsReader.h.

OutputImageSpacingType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::OutputImageSpacingType = typename OutputImageType::SpacingType

Definition at line 152 of file rtkProjectionsReader.h.

OutputImageType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::OutputImageType = TOutputImage

Some convenient type alias.

Definition at line 147 of file rtkProjectionsReader.h.

Pointer

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::Pointer = itk::SmartPointer<Self>

Definition at line 133 of file rtkProjectionsReader.h.

Self

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::Self = ProjectionsReader

Standard class type alias.

Definition at line 131 of file rtkProjectionsReader.h.

ShrinkFactorsType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::ShrinkFactorsType = itk::FixedArray<unsigned int, TOutputImage::ImageDimension>

Definition at line 157 of file rtkProjectionsReader.h.

StreamingType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::StreamingType = itk::StreamingImageFilter<TOutputImage, TOutputImage>

Definition at line 164 of file rtkProjectionsReader.h.

Superclass

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::Superclass = itk::ImageSource<TOutputImage>

Definition at line 132 of file rtkProjectionsReader.h.

WaterPrecorrectionType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::WaterPrecorrectionType = rtk::WaterPrecorrectionImageFilter<TOutputImage, TOutputImage>

Typdefs of filters of the mini-pipeline that do not depend on the raw data type.

Definition at line 163 of file rtkProjectionsReader.h.

WaterPrecorrectionVectorType

template<class TOutputImage >

using rtk::ProjectionsReader< TOutputImage >::WaterPrecorrectionVectorType = std::vector<double>

Definition at line 159 of file rtkProjectionsReader.h.

Constructor & Destructor Documentation

ProjectionsReader()

template<class TOutputImage >

rtk::ProjectionsReader< TOutputImage >::ProjectionsReader ( )

protected

~ProjectionsReader()

template<class TOutputImage >

rtk::ProjectionsReader< TOutputImage >::~ProjectionsReader ( )

overrideprotecteddefault

Member Function Documentation

ComputeLineIntegralOff()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::ComputeLineIntegralOff ( )

virtual

Convert the projection data to line integrals after pre-processing. Default is on.

ComputeLineIntegralOn()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::ComputeLineIntegralOn ( )

virtual

Convert the projection data to line integrals after pre-processing. Default is on.

ConnectElektaRawFilter()

template<class TOutputImage >

void rtk::ProjectionsReader< TOutputImage >::ConnectElektaRawFilter ( itk::ImageBase< OutputImageDimension > **  nextInputBase )

private

Function that checks and propagates the parameters of the class to the mini-pipeline. Due to concept checking, i0 propagation can only be done with unsigned shorts and is left apart without template.

CreateAnother()

template<class TOutputImage >

virtual::itk::LightObject::Pointer rtk::ProjectionsReader< TOutputImage >::CreateAnother ( ) const

virtual

Reimplemented from itk::Object.

GenerateData()

template<class TOutputImage >

void rtk::ProjectionsReader< TOutputImage >::GenerateData ( )

overrideprotectedvirtual

Does the real work.

Reimplemented from itk::ImageSource< TOutputImage >.

GenerateOutputInformation()

template<class TOutputImage >

void rtk::ProjectionsReader< TOutputImage >::GenerateOutputInformation ( )

overridevirtual

Prepare the allocation of the output image during the first back propagation of the pipeline.

Reimplemented from itk::ProcessObject.

GetAirThreshold()

template<class TOutputImage >

virtual double rtk::ProjectionsReader< TOutputImage >::GetAirThreshold ( )

virtual

Set/Get rtk::BoellaardScatterCorrectionImageFilter

GetComputeLineIntegral()

template<class TOutputImage >

virtual bool rtk::ProjectionsReader< TOutputImage >::GetComputeLineIntegral ( ) const

virtual

Convert the projection data to line integrals after pre-processing. Default is on.

GetConditionalMedianThresholdMultiplier()

template<class TOutputImage >

virtual double rtk::ProjectionsReader< TOutputImage >::GetConditionalMedianThresholdMultiplier ( )

virtual

Set/Get itk::ConditionalMedianImageFilter parameters

GetDirection()

template<class TOutputImage >

virtual OutputImageDirectionType rtk::ProjectionsReader< TOutputImage >::GetDirection ( ) const

virtual

GetFileNames()

template<class TOutputImage >

const FileNamesContainer& rtk::ProjectionsReader< TOutputImage >::GetFileNames ( ) const

inline

Set the vector of strings that contains the file names. Files are processed in sequential order.

Definition at line 181 of file rtkProjectionsReader.h.

GetI0()

template<class TOutputImage >

virtual double rtk::ProjectionsReader< TOutputImage >::GetI0 ( )

virtual

Set/Get rtk::LUTbasedVariableI0RawToAttenuationImageFilter. Default is used if not set which depends on the input image type max. If equals 0, automated estimation is activated using rtk::I0EstimationProjectionFilter.

GetIDark()

template<class TOutputImage >

virtual double rtk::ProjectionsReader< TOutputImage >::GetIDark ( )

virtual

Set/Get the intensity with no photons for rtk::LUTbasedVariableI0RawToAttenuationImageFilter.

GetImageIO()

template<class TOutputImage >

virtual const itk::ImageIOBase* rtk::ProjectionsReader< TOutputImage >::GetImageIO ( ) const

virtual

Set/Get the ImageIO helper class. Often this is created via the object factory mechanism that determines whether a particular ImageIO can read a certain file. This method provides a way to get the ImageIO instance that is created. Or you can directly specify the ImageIO to use to read a particular file in case the factory mechanism will not work properly (e.g., unknown or unusual extension).

GetLowerBoundaryCropSize()

template<class TOutputImage >

virtual OutputImageSizeType rtk::ProjectionsReader< TOutputImage >::GetLowerBoundaryCropSize ( ) const

virtual

Set/Get the cropping sizes for the upper and lower boundaries.

GetMedianRadius()

template<class TOutputImage >

virtual const MedianRadiusType& rtk::ProjectionsReader< TOutputImage >::GetMedianRadius ( ) const

virtual

Set/Get itk::ConditionalMedianImageFilter parameters

GetNameOfClass()

template<class TOutputImage >

virtual const char* rtk::ProjectionsReader< TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageSource< TOutputImage >.

GetNonNegativityConstraintThreshold()

template<class TOutputImage >

virtual double rtk::ProjectionsReader< TOutputImage >::GetNonNegativityConstraintThreshold ( )

virtual

GetOrigin()

template<class TOutputImage >

virtual OutputImagePointType rtk::ProjectionsReader< TOutputImage >::GetOrigin ( ) const

virtual

Set/Get the new image information for the input projections before any pre-processing.

GetScatterToPrimaryRatio()

template<class TOutputImage >

virtual double rtk::ProjectionsReader< TOutputImage >::GetScatterToPrimaryRatio ( )

virtual

GetShrinkFactors()

template<class TOutputImage >

virtual const ShrinkFactorsType& rtk::ProjectionsReader< TOutputImage >::GetShrinkFactors ( ) const

virtual

Set/Get itk::BinShrinkImageFilter parameters

GetSpacing()

template<class TOutputImage >

virtual OutputImageSpacingType rtk::ProjectionsReader< TOutputImage >::GetSpacing ( ) const

virtual

GetUpperBoundaryCropSize()

template<class TOutputImage >

virtual OutputImageSizeType rtk::ProjectionsReader< TOutputImage >::GetUpperBoundaryCropSize ( ) const

virtual

Set/Get the cropping sizes for the upper and lower boundaries.

GetVectorComponent()

template<class TOutputImage >

virtual unsigned int rtk::ProjectionsReader< TOutputImage >::GetVectorComponent ( )

virtual

Set/Get the index of the component to be extracted if the projection data contains vectors instead of scalars.

GetWaterPrecorrectionCoefficients()

template<class TOutputImage >

virtual WaterPrecorrectionVectorType rtk::ProjectionsReader< TOutputImage >::GetWaterPrecorrectionCoefficients ( )

virtual

Get / Set the water precorrection parameters.

New()

template<class TOutputImage >

static Pointer rtk::ProjectionsReader< TOutputImage >::New ( )

static

Method for creation through the object factory.

PrintSelf()

template<class TOutputImage >

void rtk::ProjectionsReader< TOutputImage >::PrintSelf ( std::ostream &  os, itk::Indent  indent  ) const

overrideprotectedvirtual

Reimplemented from itk::ImageSource< TOutputImage >.

PropagateI0()

template<class TOutputImage >

void rtk::ProjectionsReader< TOutputImage >::PropagateI0 ( itk::ImageBase< OutputImageDimension > **  nextInputBase )

private

Function that checks and propagates the parameters of the class to the mini-pipeline. Due to concept checking, i0 propagation can only be done with unsigned shorts and is left apart without template.

PropagateParametersToMiniPipeline()

template<class TOutputImage >

template<class TInputImage >

void rtk::ProjectionsReader< TOutputImage >::PropagateParametersToMiniPipeline ( )

private

Function that checks and propagates the parameters of the class to the mini-pipeline. Due to concept checking, i0 propagation can only be done with unsigned shorts and is left apart without template.

SetAirThreshold()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetAirThreshold ( double  _arg )

virtual

Set/Get rtk::BoellaardScatterCorrectionImageFilter

SetComputeLineIntegral()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetComputeLineIntegral ( bool  _arg )

virtual

Convert the projection data to line integrals after pre-processing. Default is on.

SetConditionalMedianThresholdMultiplier()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetConditionalMedianThresholdMultiplier ( double  _arg )

virtual

Set/Get itk::ConditionalMedianImageFilter parameters

SetDirection()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetDirection ( OutputImageDirectionType  _arg )

virtual

SetFileNames()

template<class TOutputImage >

void rtk::ProjectionsReader< TOutputImage >::SetFileNames ( const FileNamesContainer &  name )

inline

Set the vector of strings that contains the file names. Files are processed in sequential order.

Definition at line 172 of file rtkProjectionsReader.h.

SetI0()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetI0 ( double  _arg )

virtual

Set/Get rtk::LUTbasedVariableI0RawToAttenuationImageFilter. Default is used if not set which depends on the input image type max. If equals 0, automated estimation is activated using rtk::I0EstimationProjectionFilter.

SetIDark()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetIDark ( double  _arg )

virtual

Set/Get the intensity with no photons for rtk::LUTbasedVariableI0RawToAttenuationImageFilter.

SetImageIO()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetImageIO ( itk::ImageIOBase *  _arg )

virtual

Set/Get the ImageIO helper class. Often this is created via the object factory mechanism that determines whether a particular ImageIO can read a certain file. This method provides a way to get the ImageIO instance that is created. Or you can directly specify the ImageIO to use to read a particular file in case the factory mechanism will not work properly (e.g., unknown or unusual extension).

SetLowerBoundaryCropSize()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetLowerBoundaryCropSize ( OutputImageSizeType  _arg )

virtual

Set/Get the cropping sizes for the upper and lower boundaries.

SetMedianRadius()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetMedianRadius ( MedianRadiusType  _arg )

virtual

Set/Get itk::ConditionalMedianImageFilter parameters

SetNonNegativityConstraintThreshold()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetNonNegativityConstraintThreshold ( double  _arg )

virtual

SetOrigin()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetOrigin ( OutputImagePointType  _arg )

virtual

Set/Get the new image information for the input projections before any pre-processing.

SetScatterToPrimaryRatio()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetScatterToPrimaryRatio ( double  _arg )

virtual

SetShrinkFactors()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetShrinkFactors ( ShrinkFactorsType  _arg )

virtual

Set/Get itk::BinShrinkImageFilter parameters

SetSpacing()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetSpacing ( OutputImageSpacingType  _arg )

virtual

SetUpperBoundaryCropSize()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetUpperBoundaryCropSize ( OutputImageSizeType  _arg )

virtual

Set/Get the cropping sizes for the upper and lower boundaries.

SetVectorComponent()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetVectorComponent ( unsigned int  _arg )

virtual

Set/Get the index of the component to be extracted if the projection data contains vectors instead of scalars.

SetWaterPrecorrectionCoefficients()

template<class TOutputImage >

virtual void rtk::ProjectionsReader< TOutputImage >::SetWaterPrecorrectionCoefficients ( const WaterPrecorrectionVectorType  _arg )

inlinevirtual

Get / Set the water precorrection parameters.

Definition at line 246 of file rtkProjectionsReader.h.

Member Data Documentation

m_AirThreshold

template<class TOutputImage >

double rtk::ProjectionsReader< TOutputImage >::m_AirThreshold { 32000 }

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 350 of file rtkProjectionsReader.h.

m_BinningFilter

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_BinningFilter

private

Definition at line 321 of file rtkProjectionsReader.h.

m_ChangeInformationFilter

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_ChangeInformationFilter

private

Definition at line 317 of file rtkProjectionsReader.h.

m_ComputeLineIntegral

template<class TOutputImage >

bool rtk::ProjectionsReader< TOutputImage >::m_ComputeLineIntegral { true }

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 357 of file rtkProjectionsReader.h.

m_ConditionalMedianFilter

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_ConditionalMedianFilter

private

Definition at line 320 of file rtkProjectionsReader.h.

m_ConditionalMedianThresholdMultiplier

template<class TOutputImage >

double rtk::ProjectionsReader< TOutputImage >::m_ConditionalMedianThresholdMultiplier { 1. }

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 355 of file rtkProjectionsReader.h.

m_CropFilter

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_CropFilter

private

Definition at line 319 of file rtkProjectionsReader.h.

m_Direction

template<class TOutputImage >

OutputImageDirectionType rtk::ProjectionsReader< TOutputImage >::m_Direction

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 345 of file rtkProjectionsReader.h.

m_ElektaRawFilter

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_ElektaRawFilter

private

Definition at line 318 of file rtkProjectionsReader.h.

m_FileNames

template<class TOutputImage >

FileNamesContainer rtk::ProjectionsReader< TOutputImage >::m_FileNames

protected

A list of filenames to be processed.

Definition at line 295 of file rtkProjectionsReader.h.

m_I0

template<class TOutputImage >

double rtk::ProjectionsReader< TOutputImage >::m_I0 { itk::NumericTraits<double>::NonpositiveMin() }

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 353 of file rtkProjectionsReader.h.

m_I0EstimationFilter

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_I0EstimationFilter

private

Definition at line 323 of file rtkProjectionsReader.h.

m_IDark

template<class TOutputImage >

double rtk::ProjectionsReader< TOutputImage >::m_IDark { 0. }

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 354 of file rtkProjectionsReader.h.

m_ImageIO

template<class TOutputImage >

itk::ImageIOBase::Pointer rtk::ProjectionsReader< TOutputImage >::m_ImageIO { nullptr }

private

Image IO object which is stored to create the pipe only when required

Definition at line 338 of file rtkProjectionsReader.h.

m_LowerBoundaryCropSize

template<class TOutputImage >

OutputImageSizeType rtk::ProjectionsReader< TOutputImage >::m_LowerBoundaryCropSize

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 346 of file rtkProjectionsReader.h.

m_MedianRadius

template<class TOutputImage >

MedianRadiusType rtk::ProjectionsReader< TOutputImage >::m_MedianRadius

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 349 of file rtkProjectionsReader.h.

m_NonNegativityConstraintThreshold

template<class TOutputImage >

double rtk::ProjectionsReader< TOutputImage >::m_NonNegativityConstraintThreshold { itk::NumericTraits<double>::NonpositiveMin() }

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 352 of file rtkProjectionsReader.h.

m_Origin

template<class TOutputImage >

OutputImagePointType rtk::ProjectionsReader< TOutputImage >::m_Origin

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 343 of file rtkProjectionsReader.h.

m_RawCastFilter

template<class TOutputImage >

itk::ImageSource<TOutputImage>::Pointer rtk::ProjectionsReader< TOutputImage >::m_RawCastFilter

private

When m_ComputeLineIntegral is off, one just casts the value instead of doing a line integral.

Definition at line 331 of file rtkProjectionsReader.h.

m_RawDataReader

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_RawDataReader

private

The projections reader which template depends on the scanner. It is not typed because we want to keep the data as on disk. The pointer is stored to reference the filter and avoid its destruction.

Definition at line 313 of file rtkProjectionsReader.h.

m_RawToAttenuationFilter

template<class TOutputImage >

itk::ImageSource<TOutputImage>::Pointer rtk::ProjectionsReader< TOutputImage >::m_RawToAttenuationFilter

private

Conversion from raw to attenuation. Depends on the input image type, set to binning filter output by default.

Definition at line 327 of file rtkProjectionsReader.h.

m_ScatterFilter

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_ScatterFilter

private

Definition at line 322 of file rtkProjectionsReader.h.

m_ScatterToPrimaryRatio

template<class TOutputImage >

double rtk::ProjectionsReader< TOutputImage >::m_ScatterToPrimaryRatio { 0. }

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 351 of file rtkProjectionsReader.h.

m_ShrinkFactors

template<class TOutputImage >

ShrinkFactorsType rtk::ProjectionsReader< TOutputImage >::m_ShrinkFactors

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 348 of file rtkProjectionsReader.h.

m_Spacing

template<class TOutputImage >

OutputImageSpacingType rtk::ProjectionsReader< TOutputImage >::m_Spacing

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 344 of file rtkProjectionsReader.h.

m_StreamingFilter

template<class TOutputImage >

StreamingType::Pointer rtk::ProjectionsReader< TOutputImage >::m_StreamingFilter

private

Definition at line 335 of file rtkProjectionsReader.h.

m_UpperBoundaryCropSize

template<class TOutputImage >

OutputImageSizeType rtk::ProjectionsReader< TOutputImage >::m_UpperBoundaryCropSize

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 347 of file rtkProjectionsReader.h.

m_VectorComponent

template<class TOutputImage >

unsigned int rtk::ProjectionsReader< TOutputImage >::m_VectorComponent { 0 }

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 358 of file rtkProjectionsReader.h.

m_VectorComponentSelectionFilter

template<class TOutputImage >

itk::ProcessObject::Pointer rtk::ProjectionsReader< TOutputImage >::m_VectorComponentSelectionFilter

private

Pointers for pre-processing filters that are created only when required.

Definition at line 316 of file rtkProjectionsReader.h.

m_WaterPrecorrectionCoefficients

template<class TOutputImage >

WaterPrecorrectionVectorType rtk::ProjectionsReader< TOutputImage >::m_WaterPrecorrectionCoefficients

private

Copy of parameters for the mini-pipeline. Parameters are checked and propagated when required in the GenerateOutputInformation. Refer to the documentation of the corresponding filter for more information.

Definition at line 356 of file rtkProjectionsReader.h.

m_WaterPrecorrectionFilter

template<class TOutputImage >

WaterPrecorrectionType::Pointer rtk::ProjectionsReader< TOutputImage >::m_WaterPrecorrectionFilter

private

Pointers for post-processing filters that are created only when required.

Definition at line 334 of file rtkProjectionsReader.h.

OutputImageDimension

template<class TOutputImage >

constexpr unsigned int rtk::ProjectionsReader< TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension

static

ImageDimension constant

Definition at line 167 of file rtkProjectionsReader.h.

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The documentation for this class was generated from the following file:

• rtkProjectionsReader.h